If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ), 'gf_id' => 'HOM05D000642', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000642' ), 'data_identifier' => 'HOM05D000642', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000642', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '888', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11940' => 'bna', 'A03p25150' => 'bna', 'A03p39020' => 'bna', 'A04p01500' => 'bna', 'A05p05240' => 'bna', 'A05p15080' => 'bna', 'A05p34540' => 'bna', 'A06p01060' => 'bna', 'A08p01580' => 'bna', 'A08p25160' => 'bna', 'A09p37050' => 'bna', 'A09p52870' => 'bna', 'A10p16220' => 'bna', 'Aa31LG10G14960' => 'aar', 'Aa31LG10G1780' => 'aar', 'Aa31LG1G11670' => 'aar', 'Aa31LG1G26790' => 'aar', 'Aa31LG6G6230' => 'aar', 'Aa31LG8G2080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5375' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1637' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2392' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2415' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2417' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1347' => 'aag', 'Actinidia08564' => 'ach', 'Actinidia11615' => 'ach', 'Actinidia12202' => 'ach', 'Actinidia12244' => 'ach', 'Actinidia12587' => 'ach', 'Actinidia18714' => 'ach', 'Actinidia18807' => 'ach', 'Actinidia25128' => 'ach', 'Actinidia35603' => 'ach', 'Ah.02g117540' => 'amhyb', 'Ah.04g164190' => 'amhyb', 'Ah.05g174980' => 'amhyb', 'Ah.06g185500' => 'amhyb', 'Ah.09g233230' => 'amhyb', 'Ah.14g082660' => 'amhyb', 'Ah.14g086970' => 'amhyb', 'AL1G43090' => 'aly', 'AL1G61870' => 'aly', 'AL3G27190' => 'aly', 'AL4G25240' => 'aly', 'AL4G44360' => 'aly', 'AL5G42990' => 'aly', 'AL8G35340' => 'aly', 'Aqoxy1G00730' => 'aox', 'Aqoxy1G01975' => 'aox', 'Aqoxy4G00230' => 'aox', 'Aqoxy4G02366' => 'aox', 'Aqoxy7G00696' => 'aox', 'Aqoxy7G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.11WBTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z77TZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FA045' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4V96S8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W5H9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6GI2WH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92FQ09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADH1UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EBD336' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJPE9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIZ2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBS802' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQVC78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8X2MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUCN90' => 'arhy', 'AT1G29300' => 'ath', 'AT1G53380' => 'ath', 'AT2G30380' => 'ath', 'AT2G32130' => 'ath', 'AT2G45260' => 'ath', 'AT3G14870' => 'ath', 'AT3G60680' => 'ath', 'AT4G33320' => 'ath', 'AT4G34080' => 'ath', 'AT5G58960' => 'ath', 'ATR0618G296' => 'atr', 'ATR0618G350' => 'atr', 'ATR0681G385' => 'atr', 'ATR1152G107' => 'atr', 'Atru.chr1.2525' => 'acertr', 'Atru.chr10.1563' => 'acertr', 'Atru.chr10.1564' => 'acertr', 'Atru.chr2.2069' => 'acertr', 'Atru.chr3.4055' => 'acertr', 'Atru.chr5.267' => 'acertr', 'Atru.chr5.278' => 'acertr', 'AUR62001705' => 'cqu', 'AUR62004174' => 'cqu', 'AUR62004188' => 'cqu', 'AUR62013657' => 'cqu', 'AUR62013673' => 'cqu', 'AUR62019593' => 'cqu', 'AUR62020076' => 'cqu', 'AUR62037561' => 'cqu', 'AUR62039480' => 'cqu', 'AUR62041818' => 'cqu', 'BcaB01g03275' => 'bca', 'BcaB01g04625' => 'bca', 'BcaB02g08947' => 'bca', 'BcaB02g10320' => 'bca', 'BcaB03g12153' => 'bca', 'BcaB04g17081' => 'bca', 'BcaB04g18866' => 'bca', 'BcaB07g33335' => 'bca', 'BcaB08g36302' => 'bca', 'BcaB08g36303' => 'bca', 'BcaC01g00096' => 'bca', 'BcaC01g01389' => 'bca', 'BcaC01g05145' => 'bca', 'BcaC02g10171' => 'bca', 'BcaC02g11131' => 'bca', 'BcaC02g11132' => 'bca', 'BcaC02g12232' => 'bca', 'BcaC05g26956' => 'bca', 'BcaC05g29012' => 'bca', 'BcaC05g29013' => 'bca', 'BcaC07g39225' => 'bca', 'BcaC07g40586' => 'bca', 'BcaC08g43523' => 'bca', 'BolC3t13850H' => 'bol', 'BolC3t15345H' => 'bol', 'BolC3t16998H' => 'bol', 'BolC3t19833H' => 'bol', 'BolC3t21468H' => 'bol', 'BolC4t22242H' => 'bol', 'BolC4t23552H' => 'bol', 'BolC4t24751H' => 'bol', 'BolC5t31535H' => 'bol', 'BolC5t33919H' => 'bol', 'BolC6t35988H' => 'bol', 'BolC8t51152H' => 'bol', 'BolC9t57978H' => 'bol', 'BraA03t10506Z' => 'bra', 'BraA03t11715Z' => 'bra', 'BraA03t13052Z' => 'bra', 'BraA04t15868Z' => 'bra', 'BraA05t19494Z' => 'bra', 'BraA05t20431Z' => 'bra', 'BraA05t22274Z' => 'bra', 'BraA06t23334Z' => 'bra', 'BraA08t32212Z' => 'bra', 'BraA08t34471Z' => 'bra', 'BraA09t39220Z' => 'bra', 'BraA09t40719Z' => 'bra', 'BraA10t43703Z' => 'bra', 'C03p14040' => 'bna', 'C03p29980' => 'bna', 'C03p47300' => 'bna', 'C03p75720' => 'bna', 'C03p91500' => 'bna', 'C04p06170' => 'bna', 'C04p08030' => 'bna', 'C04p20130' => 'bna', 'C04p32000' => 'bna', 'C05p28070' => 'bna', 'C05p52290' => 'bna', 'C06p09140' => 'bna', 'C08p35630' => 'bna', 'C09p51160' => 'bna', 'CAN.G103.16' => 'can', 'CAN.G106.22' => 'can', 'CAN.G375.24' => 'can', 'CAN.G388.35' => 'can', 'CAN.G411.48' => 'can', 'CAN.G890.45' => 'can', 'CANSAT35G0085' => 'cansat', 'CANSAT35G1053' => 'cansat', 'CANSAT54G1978' => 'cansat', 'CANSAT54G2940' => 'cansat', 'CANSAT56G3893' => 'cansat', 'CANSAT56G4411' => 'cansat', 'CARHR028620' => 'chi', 'CARHR043590' => 'chi', 'CARHR089810' => 'chi', 'CARHR123730' => 'chi', 'CARHR140470' => 'chi', 'CARHR171080' => 'chi', 'CARHR285190' => 'chi', 'Carub.0001s2752' => 'cru', 'Carub.0001s4257' => 'cru', 'Carub.0003s1453' => 'cru', 'Carub.0004s1153' => 'cru', 'Carub.0004s2786' => 'cru', 'Carub.0005s2742' => 'cru', 'Carub.0008s1960' => 'cru', 'Ca_03956_v3' => 'car', 'Ca_05699_v3' => 'car', 'Ca_13818_v3' => 'car', 'Ca_14890_v3' => 'car', 'Ca_17895_v3' => 'car', 'Ca_25719_v3' => 'car', 'Ca_26982_v3' => 'car', 'Ca_30025_v3' => 'car', 'Cc00_g13840' => 'ccan', 'Cc01_g13720' => 'ccan', 'Cc01_g15200' => 'ccan', 'Cc02_g15640' => 'ccan', 'Cc02_g24150' => 'ccan', 'Cc05_g10970' => 'ccan', 'CDE02G1809' => 'cde', 'CDE02G3892' => 'cde', 'CDE03G0305' => 'cde', 'CDE03G0504' => 'cde', 'CDE04G0651' => 'cde', 'CDE04G3176' => 'cde', 'CDE04G3700' => 'cde', 'CDE06G1336' => 'cde', 'CDE07G0039' => 'cde', 'CDE07G0288' => 'cde', 'CDE07G0998' => 'cde', 'CDE09G0916' => 'cde', 'CDE10G0760' => 'cde', 'CDE10G0776' => 'cde', 'CDE12G0307' => 'cde', 'Cfa000653' => 'cfa', 'Cfa001765' => 'cfa', 'Cfa008120' => 'cfa', 'Cfa011188' => 'cfa', 'Cfa011632' => 'cfa', 'Cfa011816' => 'cfa', 'Cfa019549' => 'cfa', 'Ciclev10003584m.g' => 'ccl', 'Ciclev10015165m.g' => 'ccl', 'Ciclev10019751m.g' => 'ccl', 'Ciclev10019895m.g' => 'ccl', 'Ciclev10023651m.g' => 'ccl', 'Ciclev10028137m.g' => 'ccl', 'CiPaw.01G264200' => 'cil', 'CiPaw.02G169400' => 'cil', 'CiPaw.09G072900' => 'cil', 'CiPaw.10G061600' => 'cil', 'CiPaw.11G159000' => 'cil', 'CiPaw.12G112800' => 'cil', 'CiPaw.13G033700' => 'cil', 'CiPaw.13G065200' => 'cil', 'CiPaw.13G083400' => 'cil', 'CiPaw.14G026500' => 'cil', 'CiPaw.14G051800' => 'cil', 'ClCG01G023930' => 'cla', 'ClCG02G019770' => 'cla', 'ClCG05G002390' => 'cla', 'ClCG06G003140' => 'cla', 'ClCG07G010210' => 'cla', 'COL.COLO4_11195' => 'col', 'COL.COLO4_12511' => 'col', 'COL.COLO4_12524' => 'col', 'COL.COLO4_17505' => 'col', 'COL.COLO4_19085' => 'col', 'COL.COLO4_31225' => 'col', 'Cpa.g.sc112.79' => 'cpa', 'Cpa.g.sc145.2' => 'cpa', 'Cpa.g.sc2.318' => 'cpa', 'Cpa.g.sc7.118' => 'cpa', 'Cpa.g.sc77.32' => 'cpa', 'Cpa.g.sc87.57' => 'cpa', 'CsaV3_3G009830' => 'csa', 'CsaV3_4G008120' => 'csa', 'CsaV3_4G032980' => 'csa', 'CsaV3_6G009260' => 'csa', 'CsaV3_6G016480' => 'csa', 'CsaV3_6G051070' => 'csa', 'CSS0008741' => 'camsi', 'CSS0009702' => 'camsi', 'CSS0019511' => 'camsi', 'CSS0021421' => 'camsi', 'CSS0021434' => 'camsi', 'CSS0022609' => 'camsi', 'CSS0026203' => 'camsi', 'CSS0033154' => 'camsi', 'CSS0038102' => 'camsi', 'CSS0043174' => 'camsi', 'CSS0046249' => 'camsi', 'CSS0047043' => 'camsi', 'DCAR_003979' => 'dca', 'DCAR_005148' => 'dca', 'DCAR_008549' => 'dca', 'DCAR_010699' => 'dca', 'DCAR_018940' => 'dca', 'DCAR_019603' => 'dca', 'DCAR_021028' => 'dca', 'DCAR_027977' => 'dca', 'DCAR_031516' => 'dca', 'Dinv12269' => 'din', 'Dinv12747' => 'din', 'Dinv14271' => 'din', 'Dinv14476' => 'din', 'Dinv15005' => 'din', 'Dinv18377' => 'din', 'Dinv22098' => 'din', 'Dinv28721' => 'din', 'Dinv32335' => 'din', 'Dinv43681' => 'din', 'Dinv44132' => 'din', 'Duzib133G1114' => 'dzi', 'Duzib138G0332' => 'dzi', 'Duzib138G0463' => 'dzi', 'Duzib160G0094' => 'dzi', 'Duzib168G1843' => 'dzi', 'Duzib168G1912' => 'dzi', 'Duzib170G0858' => 'dzi', 'Duzib192G0846' => 'dzi', 'Duzib213G0611' => 'dzi', 'Duzib235G1286' => 'dzi', 'Duzib268G0663' => 'dzi', 'Duzib268G1270' => 'dzi', 'Duzib268G1407' => 'dzi', 'ECA234G0915' => 'eca', 'ECA234G1390' => 'eca', 'ECA234G3349' => 'eca', 'ECA234G3637' => 'eca', 'ECA236G0717' => 'eca', 'ECA236G1070' => 'eca', 'ECA236G3251' => 'eca', 'ECA240G0366' => 'eca', 'ECA247G0120' => 'eca', 'ECA248G3773' => 'eca', 'EL10Ac1g00845' => 'bvu', 'EL10Ac1g00865' => 'bvu', 'EL10Ac4g08369' => 'bvu', 'EL10Ac7g16105' => 'bvu', 'EL10Ac8g20557' => 'bvu', 'Eucgr.A00953' => 'egr', 'Eucgr.B02281' => 'egr', 'Eucgr.E01476' => 'egr', 'Eucgr.F01250' => 'egr', 'Eucgr.F03280' => 'egr', 'Eucgr.G02755' => 'egr', 'Eucgr.H02867' => 'egr', 'Eucgr.L02546' => 'egr', 'FAN01G1345' => 'fan', 'FAN01G1752' => 'fan', 'FAN03G1042' => 'fan', 'FAN03G1331' => 'fan', 'FAN03G2866' => 'fan', 'FAN06G1533' => 'fan', 'FAN06G2683' => 'fan', 'FAN06G3316' => 'fan', 'FAN06G4460' => 'fan', 'FAN10G3117' => 'fan', 'FAN10G3604' => 'fan', 'FAN10G4279' => 'fan', 'FAN11G0653' => 'fan', 'FAN11G0989' => 'fan', 'FAN11G1517' => 'fan', 'FAN11G3436' => 'fan', 'FAN11G3496' => 'fan', 'FAN16G0217' => 'fan', 'FAN16G0689' => 'fan', 'FAN16G1468' => 'fan', 'FAN16G1731' => 'fan', 'FAN16G3032' => 'fan', 'FAN21G0319' => 'fan', 'FAN21G0371' => 'fan', 'FAN21G1904' => 'fan', 'FAN21G3931' => 'fan', 'FAN25G1708' => 'fan', 'FAN25G1994' => 'fan', 'FAN25G2200' => 'fan', 'FAN25G3857' => 'fan', 'FvH4_3g07250' => 'fve', 'FvH4_3g18160' => 'fve', 'FvH4_3g37820' => 'fve', 'FvH4_3g37850' => 'fve', 'FvH4_3g40290' => 'fve', 'FvH4_7g11240' => 'fve', 'FvH4_7g11400' => 'fve', 'Glyma.01G078400' => 'gma', 'Glyma.01G138800' => 'gma', 'Glyma.02G235400' => 'gma', 'Glyma.02G304400' => 'gma', 'Glyma.03G028400' => 'gma', 'Glyma.05G161200' => 'gma', 'Glyma.06G227500' => 'gma', 'Glyma.08G118600' => 'gma', 'Glyma.08G334700' => 'gma', 'Glyma.11G169055' => 'gma', 'Glyma.12G156900' => 'gma', 'Glyma.12G230800' => 'gma', 'Glyma.13G268800' => 'gma', 'Glyma.14G009400' => 'gma', 'Glyma.14G203400' => 'gma', 'Glyma.18G067600' => 'gma', 'Gohir.A01G050300' => 'ghi', 'Gohir.A05G090800' => 'ghi', 'Gohir.A05G153200' => 'ghi', 'Gohir.A06G199400' => 'ghi', 'Gohir.A08G030700' => 'ghi', 'Gohir.A08G031400' => 'ghi', 'Gohir.A08G136000' => 'ghi', 'Gohir.A10G034400' => 'ghi', 'Gohir.A11G080000' => 'ghi', 'Gohir.A11G095900' => 'ghi', 'Gohir.A13G150500' => 'ghi', 'Gohir.D01G040400' => 'ghi', 'Gohir.D05G091800' => 'ghi', 'Gohir.D05G155800' => 'ghi', 'Gohir.D06G206700' => 'ghi', 'Gohir.D08G041800' => 'ghi', 'Gohir.D08G042501' => 'ghi', 'Gohir.D08G156700' => 'ghi', 'Gohir.D10G035100' => 'ghi', 'Gohir.D11G084700' => 'ghi', 'Gohir.D13G154800' => 'ghi', 'Gorai.002G050200' => 'gra', 'Gorai.004G040500' => 'gra', 'Gorai.004G041100' => 'gra', 'Gorai.004G163100' => 'gra', 'Gorai.007G090300' => 'gra', 'Gorai.009G094300' => 'gra', 'Gorai.009G160300' => 'gra', 'Gorai.010G241100' => 'gra', 'Gorai.011G036900' => 'gra', 'Gorai.013G175100' => 'gra', 'GSVIVG01014172001' => 'vvi', 'GSVIVG01021261001' => 'vvi', 'GSVIVG01024581001' => 'vvi', 'GSVIVG01024812001' => 'vvi', 'GSVIVG01027658001' => 'vvi', 'HanXRQChr01g0011011' => 'han', 'HanXRQChr01g0011021' => 'han', 'HanXRQChr02g0050211' => 'han', 'HanXRQChr03g0073471' => 'han', 'HanXRQChr04g0122641' => 'han', 'HanXRQChr05g0135541' => 'han', 'HanXRQChr08g0228341' => 'han', 'HanXRQChr09g0245681' => 'han', 'HanXRQChr10g0305511' => 'han', 'HanXRQChr11g0338001' => 'han', 'HanXRQChr12g0368921' => 'han', 'HanXRQChr16g0519131' => 'han', 'HanXRQChr16g0520671' => 'han', 'Haze_02660' => 'cav', 'Haze_06176' => 'cav', 'Haze_09309' => 'cav', 'Haze_16790' => 'cav', 'Haze_24237' => 'cav', 'Haze_24452' => 'cav', 'Hma1.2p1_0119F.1_g056860' => 'hma', 'Hma1.2p1_0274F.1_g110240' => 'hma', 'Hma1.2p1_0301F.1_g118350' => 'hma', 'Hma1.2p1_0301F.1_g118440' => 'hma', 'Hma1.2p1_0301F.1_g118530' => 'hma', 'Hma1.2p1_0799F.1_g219920' => 'hma', 'Hma1.2p1_1902F.1_g307060' => 'hma', 'Hma1.2p1_1929F.1_g307900' => 'hma', 'HPP92_000560' => 'vpl', 'HPP92_000572' => 'vpl', 'HPP92_005487' => 'vpl', 'HPP92_014437' => 'vpl', 'HPP92_014440' => 'vpl', 'HPP92_017920' => 'vpl', 'HPP92_022307' => 'vpl', 'HPP92_024058' => 'vpl', 'Hund10482' => 'sun', 'Hund17037' => 'sun', 'Hund18867' => 'sun', 'Lalb_Chr01g0016511' => 'lal', 'Lalb_Chr03g0031221' => 'lal', 'Lalb_Chr03g0039691' => 'lal', 'Lalb_Chr07g0186311' => 'lal', 'Lalb_Chr07g0189991' => 'lal', 'Lalb_Chr13g0291831' => 'lal', 'Lalb_Chr13g0295301' => 'lal', 'Lalb_Chr15g0086341' => 'lal', 'Lalb_Chr18g0054311' => 'lal', 'Lalb_Chr19g0133771' => 'lal', 'Lalb_Chr20g0109221' => 'lal', 'Lalb_Chr20g0115101' => 'lal', 'Lalb_Chr25g0285761' => 'lal', 'Lj1A1176T62' => 'lonja', 'Lj1g0026580' => 'lja', 'Lj1P122T41' => 'lonja', 'Lj2A1074T38' => 'lonja', 'Lj2C1074T13' => 'lonja', 'Lj2P318T18' => 'lonja', 'Lj3g0017813' => 'lja', 'Lj3g0021359' => 'lja', 'Lj4g0006637' => 'lja', 'Lj6g0000613' => 'lja', 'Lj8P147T28' => 'lonja', 'Lj9E568T0' => 'lonja', 'Lj9P566T42' => 'lonja', 'LjContig00141g0009065' => 'lja', 'Lsat_1_v5_gn_1_89501' => 'lsa', 'Lsat_1_v5_gn_4_43041' => 'lsa', 'Lsat_1_v5_gn_5_126500' => 'lsa', 'Lsat_1_v5_gn_5_171020' => 'lsa', 'Lsat_1_v5_gn_7_102300' => 'lsa', 'Lsat_1_v5_gn_7_9020' => 'lsa', 'Lsat_1_v5_gn_8_12001' => 'lsa', 'Lsat_1_v5_gn_8_72140' => 'lsa', 'Lsat_1_v5_gn_9_100960' => 'lsa', 'Lsat_1_v5_gn_9_14181' => 'lsa', 'Manes.01G165400' => 'mes', 'Manes.01G267500' => 'mes', 'Manes.01G268200' => 'mes', 'Manes.02G122542' => 'mes', 'Manes.03G100000' => 'mes', 'Manes.05G047200' => 'mes', 'Manes.05G048100' => 'mes', 'Manes.15G096500' => 'mes', 'Manes.16G042600' => 'mes', 'Manes.17G059500' => 'mes', 'Manes.18G139600' => 'mes', 'MBI04_g11432_MAGBIO' => 'mbi', 'MBI05_g34818_MAGBIO' => 'mbi', 'MBI07_g00457_MAGBIO' => 'mbi', 'MBI14_g32937_MAGBIO' => 'mbi', 'MBI14_g41425_MAGBIO' => 'mbi', 'MD00G1008600' => 'mdo', 'MD02G1206300' => 'mdo', 'MD02G1208300' => 'mdo', 'MD03G1053800' => 'mdo', 'MD03G1078100' => 'mdo', 'MD03G1276500' => 'mdo', 'MD07G1117100' => 'mdo', 'MD07G1118700' => 'mdo', 'MD10G1275000' => 'mdo', 'MD11G1055400' => 'mdo', 'MD11G1082800' => 'mdo', 'MD11G1265400' => 'mdo', 'Medtr0178s0030' => 'mtr', 'Medtr2g075910' => 'mtr', 'Medtr3g462150' => 'mtr', 'Medtr4g025420' => 'mtr', 'Medtr5g075180' => 'mtr', 'Medtr8g059485' => 'mtr', 'Medtr8g087400' => 'mtr', 'MELO3C006205.2' => 'cme', 'MELO3C007196.2' => 'cme', 'MELO3C016124.2' => 'cme', 'MELO3C021152.2' => 'cme', 'MELO3C025651.2' => 'cme', 'MELO3C025877.2' => 'cme', 'Migut.B01606' => 'egut', 'Migut.H01408' => 'egut', 'Migut.H02004' => 'egut', 'Migut.M00707' => 'egut', 'Migut.M01007' => 'egut', 'Migut.N00744' => 'egut', 'Migut.N00896' => 'egut', 'Migut.N01623' => 'egut', 'MSTRG.12662' => 'ama', 'MSTRG.12704' => 'ama', 'MSTRG.13234' => 'ama', 'MSTRG.14238' => 'ama', 'MSTRG.14968' => 'ama', 'MSTRG.20731' => 'ama', 'MSTRG.28185' => 'ama', 'MSTRG.4900' => 'ama', 'MSTRG.6681' => 'ama', 'MSTRG.7432' => 'ama', 'Nitab4.5_0000002g0090' => 'nta', 'Nitab4.5_0000035g0280' => 'nta', 'Nitab4.5_0000035g0310' => 'nta', 'Nitab4.5_0000035g0320' => 'nta', 'Nitab4.5_0000437g0020' => 'nta', 'Nitab4.5_0000457g0070' => 'nta', 'Nitab4.5_0000788g0060' => 'nta', 'Nitab4.5_0001329g0050' => 'nta', 'Nitab4.5_0001607g0010' => 'nta', 'Nitab4.5_0003166g0010' => 'nta', 'Nitab4.5_0003912g0070' => 'nta', 'Nitab4.5_0004381g0020' => 'nta', 'Nitab4.5_0006663g0020' => 'nta', 'Nitab4.5_0007927g0030' => 'nta', 'Nitab4.5_0010616g0020' => 'nta', 'Nitab4.5_0012630g0010' => 'nta', 'Nn1g01085' => 'nnu', 'Nn1g01116' => 'nnu', 'Nn1g03094' => 'nnu', 'Nn1g07938' => 'nnu', 'Nn2g10239' => 'nnu', 'Nn2g10343' => 'nnu', 'Nn2g10445' => 'nnu', 'Nn2g11348' => 'nnu', 'Nn2g12693' => 'nnu', 'Nn2g13589' => 'nnu', 'Nn2g13592' => 'nnu', 'Nn3g19849' => 'nnu', 'Nn3g21082' => 'nnu', 'Nn4g26387' => 'nnu', 'Nn5g27841' => 'nnu', 'Nn6g33431' => 'nnu', 'Nn6g34045' => 'nnu', 'Nn6g34464' => 'nnu', 'Nn6g35516' => 'nnu', 'Nn8g38855' => 'nnu', 'Oeu011372.1' => 'oeu', 'Oeu011911.1' => 'oeu', 'Oeu011916.1' => 'oeu', 'Oeu031019.1' => 'oeu', 'Oeu039878.1' => 'oeu', 'Oeu040925.1' => 'oeu', 'Oeu055512.1' => 'oeu', 'Oeu059256.1' => 'oeu', 'Oeu060180.1' => 'oeu', 'Oeu061363.1' => 'oeu', 'Os01g0203800' => 'osa', 'Os01g0823700' => 'osa', 'Os10g0378400' => 'osa', 'Os10g0508100' => 'osa', 'Os11g0114150' => 'osa', 'Os11g0250900' => 'osa', 'Os12g0113900' => 'osa', 'Peaxi162Scf00013g00304' => 'pax', 'Peaxi162Scf00111g00148' => 'pax', 'Peaxi162Scf00202g00189' => 'pax', 'Peaxi162Scf00369g00005' => 'pax', 'Peaxi162Scf00369g00015' => 'pax', 'Peaxi162Scf00959g00013' => 'pax', 'Peaxi162Scf00959g00120' => 'pax', 'Peaxi162Scf01200g00014' => 'pax', 'PGR031G2371' => 'pgr', 'PGR031G3317' => 'pgr', 'PGR042G0701' => 'pgr', 'PGR042G3412' => 'pgr', 'PGR083G2260' => 'pgr', 'PGR102G1863' => 'pgr', 'PGR119G0859' => 'pgr', 'PGSC0003DMG400001576' => 'stu', 'PGSC0003DMG400007067' => 'stu', 'PGSC0003DMG400015390' => 'stu', 'PGSC0003DMG400028419' => 'stu', 'PGSC0003DMG402007021' => 'stu', 'PGSC0003DMG402015339' => 'stu', 'Phvul.002G241300' => 'pvu', 'Phvul.005G081200' => 'pvu', 'Phvul.006G063700' => 'pvu', 'Phvul.006G076800' => 'pvu', 'Phvul.008G143000' => 'pvu', 'Phvul.008G248500' => 'pvu', 'Phvul.010G080800' => 'pvu', 'Phvul.011G165700' => 'pvu', 'Potri.001G387700' => 'ptr', 'Potri.002G145000' => 'ptr', 'Potri.002G145900' => 'ptr', 'Potri.004G061600' => 'ptr', 'Potri.009G041000' => 'ptr', 'Potri.011G071000' => 'ptr', 'Potri.011G108000' => 'ptr', 'Potri.013G155400' => 'ptr', 'Potri.014G066600' => 'ptr', 'Potri.014G067600' => 'ptr', 'Potri.019G128300' => 'ptr', 'Pp3c14_12190' => 'ppa', 'Pp3c16_21860' => 'ppa', 'Pp3c1_34000' => 'ppa', 'Pp3c1_34530' => 'ppa', 'Pp3c22_7650' => 'ppa', 'Pp3c26_10800' => 'ppa', 'Pp3c2_14620' => 'ppa', 'Pp3c3_6880' => 'ppa', 'Pp3c4_32300' => 'ppa', 'Pp3c5_24260' => 'ppa', 'Pp3c6_4090' => 'ppa', 'Pp3c8_13760' => 'ppa', 'Prupe.2G140200' => 'ppe', 'Prupe.2G141900' => 'ppe', 'Prupe.4G067400' => 'ppe', 'Prupe.4G160500' => 'ppe', 'Prupe.6G042900' => 'ppe', 'Prupe.6G063100' => 'ppe', 'Psat2g052160' => 'psa', 'Psat3g174840' => 'psa', 'Psat4g140000' => 'psa', 'Psat5g162600' => 'psa', 'Psat5g235600' => 'psa', 'Psat7g068400' => 'psa', 'Psat7g231120' => 'psa', 'PSO017G3251' => 'pso', 'PSO170G5515' => 'pso', 'PSO170G5824' => 'pso', 'PSO339G2572' => 'pso', 'PSO339G6155' => 'pso', 'PSO384G0280' => 'pso', 'PSO384G2305' => 'pso', 'PSO478G4554' => 'pso', 'PSO675G5550' => 'pso', 'PSO782G2315' => 'pso', 'PSO782G4512' => 'pso', 'QL01p025127' => 'qlo', 'QL01p027406' => 'qlo', 'QL04p039347' => 'qlo', 'QL05p049803' => 'qlo', 'QL08p025607' => 'qlo', 'QL08p052884' => 'qlo', 'QL10p012687' => 'qlo', 'QL93p2004_0027' => 'qlo', 'RcHm_v2.0_Chr1g0349381' => 'rch', 'RcHm_v2.0_Chr1g0349691' => 'rch', 'RcHm_v2.0_Chr5g0011811' => 'rch', 'RcHm_v2.0_Chr5g0030591' => 'rch', 'RcHm_v2.0_Chr5g0068001' => 'rch', 'RcHm_v2.0_Chr5g0068051' => 'rch', 'RcHm_v2.0_Chr5g0068071' => 'rch', 'RcHm_v2.0_Chr5g0072631' => 'rch', 'Rhsim04G0027100' => 'rsi', 'Rhsim06G0209900' => 'rsi', 'Rhsim07G0030300' => 'rsi', 'Rhsim07G0219400' => 'rsi', 'Rhsim13G0061000' => 'rsi', 'Rhsim13G0074300' => 'rsi', 'Rhsim13G0187600' => 'rsi', 'Sabra02G0112900' => 'sbr', 'Sabra02G0113600' => 'sbr', 'Sabra04G0040900' => 'sbr', 'Sabra09G0028800' => 'sbr', 'Sabra11G0055600' => 'sbr', 'Sabra11G0058700' => 'sbr', 'Sabra11G0095900' => 'sbr', 'Sabra13G0125200' => 'sbr', 'Sabra14G0046700' => 'sbr', 'Sabra16G0255000' => 'sbr', 'Sabra19G0125900' => 'sbr', 'SalBow1G6363' => 'sbo', 'SalBow2G1327' => 'sbo', 'SalBow2G1826' => 'sbo', 'SalBow5G0474' => 'sbo', 'SalBow5G1362' => 'sbo', 'SalBow5G5624' => 'sbo', 'SalBow7G0975' => 'sbo', 'SalBow7G0988' => 'sbo', 'SalBow7G1089' => 'sbo', 'SalBow7G3026' => 'sbo', 'SalBow8G0168' => 'sbo', 'SalBow8G0554' => 'sbo', 'Sc02g0002720' => 'sci', 'Sc03g0010590' => 'sci', 'Sc05g0006850' => 'sci', 'Sc12g0001000' => 'sci', 'Sc16g0007680' => 'sci', 'Sc18g0006880' => 'sci', 'Sc21g0006150' => 'sci', 'Sed0000857' => 'sed', 'Sed0007479' => 'sed', 'Sed0010989' => 'sed', 'Sed0011637' => 'sed', 'Sed0021470' => 'sed', 'Sed0021897' => 'sed', 'Sed0022065' => 'sed', 'Sed0025912' => 'sed', 'Sed0026212' => 'sed', 'Sed0026259' => 'sed', 'SEGI_02960' => 'sgi', 'SEGI_06813' => 'sgi', 'SEGI_09110' => 'sgi', 'SEGI_10384' => 'sgi', 'SEGI_13699' => 'sgi', 'SEGI_18935' => 'sgi', 'SEGI_36578' => 'sgi', 'SGA_v2.0_scaffold104G30145' => 'sas', 'SGA_v2.0_scaffold106G30601' => 'sas', 'SGA_v2.0_scaffold120G32979' => 'sas', 'SGA_v2.0_scaffold153G36979' => 'sas', 'SGA_v2.0_scaffold181G39751' => 'sas', 'SGA_v2.0_scaffold1G00088' => 'sas', 'SGA_v2.0_scaffold287G47179' => 'sas', 'SGA_v2.0_scaffold43G16489' => 'sas', 'SGA_v2.0_scaffold47G17802' => 'sas', 'SGA_v2.0_scaffold4G01986' => 'sas', 'SGA_v2.0_scaffold73G24399' => 'sas', 'SHI27666' => 'shi', 'SMO011G0018' => 'smo', 'SMO172G0072' => 'smo', 'SMO358G0687' => 'smo', 'Solyc01g091120.3' => 'sly', 'Solyc02g072140.1' => 'sly', 'Solyc02g083110.1' => 'sly', 'Solyc05g050930.2' => 'sly', 'Solyc07g062310.4' => 'sly', 'Solyc12g014340.1' => 'sly', 'Sopen01g036860' => 'spe', 'Sopen02g021100' => 'spe', 'Sopen02g027870' => 'spe', 'Sopen05g029400' => 'spe', 'Sopen07g030580' => 'spe', 'Sp1g25240' => 'spa', 'Sp1g39930' => 'spa', 'Sp3g13080' => 'spa', 'Sp4g12940' => 'spa', 'Sp4g27280' => 'spa', 'Sp5g02560' => 'spa', 'Sp6g20660' => 'spa', 'SpUn0031_0040' => 'spa', 'TAR369G0174' => 'tar', 'TAR369G0453' => 'tar', 'TAR374G1089' => 'tar', 'TAR374G1241' => 'tar', 'TAR375G0486' => 'tar', 'TAR375G1102' => 'tar', 'TAR376G0155' => 'tar', 'TAR381G0367' => 'tar', 'TAR623G0160' => 'tar', 'TAR626G1054' => 'tar', 'TAR626G1936' => 'tar', 'TAR627G0321' => 'tar', 'TAR629G2373' => 'tar', 'TAR633G0724' => 'tar', 'THA.LOC104799408' => 'tha', 'THA.LOC104802461' => 'tha', 'THA.LOC104810433' => 'tha', 'THA.LOC104812644' => 'tha', 'THA.LOC104813322' => 'tha', 'THA.LOC104815573' => 'tha', 'THA.LOC104815821' => 'tha', 'THA.LOC104817226' => 'tha', 'THA.LOC104817236' => 'tha', 'THA.LOC104822570' => 'tha', 'THA.LOC104827613' => 'tha', 'Thecc.01G379100' => 'tca', 'Thecc.01G380400' => 'tca', 'Thecc.06G165000' => 'tca', 'Thecc.07G127300' => 'tca', 'Thecc.09G307500' => 'tca', 'Thecc.09G362200' => 'tca', 'Thhalv10001462m.g' => 'esa', 'Thhalv10005850m.g' => 'esa', 'Thhalv10007535m.g' => 'esa', 'Thhalv10011460m.g' => 'esa', 'Thhalv10013123m.g' => 'esa', 'Thhalv10016718m.g' => 'esa', 'Thhalv10017829m.g' => 'esa', 'Thhalv10022041m.g' => 'esa', 'TPR.G16068' => 'tpr', 'TPR.G16492' => 'tpr', 'TPR.G25739' => 'tpr', 'TPR.G30116' => 'tpr', 'TPR.G39038' => 'tpr', 'TPR.G6725' => 'tpr', 'TPR.G7585' => 'tpr', 'TWI14G1003' => 'twi', 'TWI14G1200' => 'twi', 'TWI31G0730' => 'twi', 'TWI38G0219' => 'twi', 'TWI38G0656' => 'twi', 'TWI39G1191' => 'twi', 'TWI53G0667' => 'twi', 'TWI59G0294' => 'twi', 'TWI59G1179' => 'twi', 'TWI73G0697' => 'twi', 'TWI79G0016' => 'twi', 'unitig_0.g1305' => 'ugi', 'unitig_0.g2037' => 'ugi', 'unitig_0.g315' => 'ugi', 'unitig_0.g316' => 'ugi', 'unitig_21.g20211' => 'ugi', 'unitig_22.g6709' => 'ugi', 'unitig_578.g16460' => 'ugi', 'unitig_578.g16461' => 'ugi', 'unitig_8.g3330' => 'ugi', 'unitig_8.g4595' => 'ugi', 'unitig_85.g27424' => 'ugi', 'unitig_90.g27503' => 'ugi', 'vmacro02889' => 'vma', 'vmacro03002' => 'vma', 'vmacro09488' => 'vma', 'vmacro11951' => 'vma', 'vmacro13418' => 'vma', 'VMungo0251G3037' => 'vmu', 'VMungo0251G3757' => 'vmu', 'VMungo0331G0632' => 'vmu', 'VMungo0331G1657' => 'vmu', 'VMungo0540G1862' => 'vmu', 'VMungo0540G2457' => 'vmu', 'VMungo0647G2012' => 'vmu', 'VMungo1080G1679' => 'vmu', 'VMungo1127G1652' => 'vmu', 'VMungo1215G1541' => 'vmu', 'VMungo1309G0411' => 'vmu', 'VMungo1379G0001' => 'vmu', 'VMungo1383G1273' => 'vmu', 'Zm00001eb043950' => 'zma', 'Zm00001eb063110' => 'zma', 'Zm00001eb120780' => 'zma', 'Zm00001eb149440' => 'zma', 'Zm00001eb194990' => 'zma', 'Zm00001eb220670' => 'zma', 'Zm00001eb283890' => 'zma', 'Zm00001eb347360' => 'zma', 'Zm00001eb404850' => 'zma', 'Zm00001eb406160' => 'zma', 'Zm00001eb406180' => 'zma' ) $gf_id = 'HOM05D000642' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000642' ) $data_identifier = 'HOM05D000642' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 20, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 12, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 11, 'sbo' => (int) 12, 'sci' => (int) 7, 'sed' => (int) 10, 'sgi' => (int) 7, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 14, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 13, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1